IL_5UYQ_130

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_130 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.143

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5UYQ|1|A|U|409
5UYQ|1|A|G|410
5UYQ|1|A|A|411
5UYQ|1|A|A|412
5UYQ|1|A|G|413
5UYQ|1|A|A|414
5UYQ|1|A|A|415
5UYQ|1|A|G|416
*
5UYQ|1|A|U|427
5UYQ|1|A|G|428
5UYQ|1|A|U|429
5UYQ|1|A|A|430
5UYQ|1|A|A|431
5UYQ|1|A|A|432
5UYQ|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4