IL_5UYQ_143
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAGAGG*CUGGA
- Length
- 11 nucleotides
- Bulged bases
- 5UYQ|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYQ_143 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.3803
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5UYQ|1|A|U|662
5UYQ|1|A|A|663
5UYQ|1|A|G|664
5UYQ|1|A|A|665
5UYQ|1|A|G|666
5UYQ|1|A|G|667
*
5UYQ|1|A|C|739
5UYQ|1|A|U|740
5UYQ|1|A|G|741
5UYQ|1|A|G|742
5UYQ|1|A|A|743
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
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