IL_5UYQ_143

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAGAGG*CUGGA

Length

11 nucleotides

Bulged bases

5UYQ|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYQ|1|A|U|662
5UYQ|1|A|A|663
5UYQ|1|A|G|664
5UYQ|1|A|A|665
5UYQ|1|A|G|666
5UYQ|1|A|G|667
*
5UYQ|1|A|C|739
5UYQ|1|A|U|740
5UYQ|1|A|G|741
5UYQ|1|A|G|742
5UYQ|1|A|A|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18