IL_5UYQ_170
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 5UYQ|1|A|A|1492, 5UYQ|1|A|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYQ_170 not in the Motif Atlas
- Geometric match to IL_2O3X_003
- Geometric discrepancy: 0.3163
- The information below is about IL_2O3X_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
5UYQ|1|A|C|1407
5UYQ|1|A|A|1408
5UYQ|1|A|C|1409
*
5UYQ|1|A|G|1491
5UYQ|1|A|A|1492
5UYQ|1|A|A|1493
5UYQ|1|A|G|1494
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain V
- mRNA
- Chain Y
- Transfer RNA; tRNA
Coloring options: