IL_5UYQ_189

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5UYQ|1|01|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_189 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.271

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5UYQ|1|01|C|274
5UYQ|1|01|C|275
5UYQ|1|01|U|276
5UYQ|1|01|G|277
5UYQ|1|01|A|278
5UYQ|1|01|A|279
5UYQ|1|01|U|280
5UYQ|1|01|C|281
*
5UYQ|1|01|G|359
5UYQ|1|01|U|360
5UYQ|1|01|G|361
5UYQ|1|01|A|362
5UYQ|1|01|G|363

Current chains

Chain 01

23S ribosomal RNA

Nearby chains