IL_5V1K_002

3D structure

PDB id

5V1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of R-GNA dodecamer

Experimental method

X-RAY DIFFRACTION

Resolution

1.18 Å

Loop

Sequence

CGAA(5BU)*A(5BU)(8RJ)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5BU, 8RJ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

5V1K|1|A|C|103
5V1K|1|A|G|104
5V1K|1|A|A|105
5V1K|1|A|A|106
5V1K|1|A|5BU|107||A
*
5V1K|1|B|A|206
5V1K|1|B|5BU|207
5V1K|1|B|8RJ|208
5V1K|1|B|A|209
5V1K|1|B|G|210

Current chains

Chain A

RNA (5'-R(*CP*GP*CP*GP*AP*AP*(5BU)P*(8RJ)P*AP*GP*CP*G)-3')

Chain B

RNA (5'-R(*CP*GP*CP*GP*AP*AP*(5BU)P*(8RJ)P*AP*GP*CP*G)-3')

Nearby chains