IL_5V3I_002

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CGAAG*CAAG

Length

9 nucleotides

Bulged bases

5V3I|1|A|A|621, 5V3I|1|A|A|622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V3I_002 not in the Motif Atlas

Geometric match to IL_4R4V_002

Geometric discrepancy: 0.0913

The information below is about IL_4R4V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63969.1

Basepair signature

cWW-L-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5V3I|1|A|C|619
5V3I|1|A|G|620
5V3I|1|A|A|621
5V3I|1|A|A|622
5V3I|1|A|G|623
*
5V3I|1|A|C|637
5V3I|1|A|A|638
5V3I|1|A|A|639
5V3I|1|A|G|640

Current chains

Chain A

VS Ribozyme RNA

Nearby chains