IL_5V3I_004

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

5V3I|1|A|A|713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V3I_004 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.2752

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

5V3I|1|A|C|660
5V3I|1|A|A|661
*
5V3I|1|A|U|712
5V3I|1|A|A|713
5V3I|1|A|G|714

Current chains

Chain A

VS Ribozyme RNA

Nearby chains