IL_5V3I_005

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UAAG*CA

Length

6 nucleotides

Bulged bases

5V3I|1|A|A|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V3I_005 not in the Motif Atlas

Geometric match to IL_4R4V_005

Geometric discrepancy: 0.0677

The information below is about IL_4R4V_005

Detailed Annotation

Intercalated cWS

Broad Annotation

Intercalated cWS

Motif group

IL_16386.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5V3I|1|A|U|719
5V3I|1|A|A|720
5V3I|1|A|A|721
5V3I|1|A|G|722
*
5V3I|1|A|C|755
5V3I|1|A|A|756

Current chains

Chain A

VS Ribozyme RNA

Nearby chains