IL_5V8I_043

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

5V8I|1|1A|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_043 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.0799

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5V8I|1|1A|C|1202
5V8I|1|1A|G|1203
5V8I|1|1A|A|1204
5V8I|1|1A|U|1205
5V8I|1|1A|G|1206
*
5V8I|1|1A|U|1240
5V8I|1|1A|A|1241
5V8I|1|1A|A|1242
5V8I|1|1A|G|1243

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15