IL_5V8I_067

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5V8I|1|1A|G|1801, 5V8I|1|1A|G|1816, 5V8I|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_067 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.051

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5V8I|1|1A|U|1798
5V8I|1|1A|G|1799
5V8I|1|1A|C|1800
5V8I|1|1A|G|1801
5V8I|1|1A|A|1802
5V8I|1|1A|A|1803
5V8I|1|1A|C|1804
*
5V8I|1|1A|G|1813
5V8I|1|1A|G|1814
5V8I|1|1A|A|1815
5V8I|1|1A|G|1816
5V8I|1|1A|G|1817
5V8I|1|1A|U|1818
5V8I|1|1A|A|1819
5V8I|1|1A|U|1820
5V8I|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA