IL_5V8I_098

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5V8I|1|1A|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_098 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.3517

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_42771.1

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5V8I|1|1A|C|2591
5V8I|1|1A|G|2592
*
5V8I|1|1A|C|2601
5V8I|1|1A|A|2602
5V8I|1|1A|G|2603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2