IL_5V8I_153

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_153 not in the Motif Atlas

Homologous match to IL_4LFB_043

Geometric discrepancy: 0.1227

The information below is about IL_4LFB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|1a|G|1050
5V8I|1|1a|C|1051
5V8I|1|1a|U|1052
*
5V8I|1|1a|G|1206
5V8I|1|1a|2MG|1207
5V8I|1|1a|C|1208

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1n

30S ribosomal protein S14 type Z

Chain 1y

Ribosome-associated inhibitor A