IL_5V8I_213

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

5V8I|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2A|C|1043
5V8I|1|2A|G|1044
5V8I|1|2A|A|1045
5V8I|1|2A|A|1046
5V8I|1|2A|G|1047
5V8I|1|2A|A|1048
5V8I|1|2A|C|1049
5V8I|1|2A|A|1050
5V8I|1|2A|G|1051
5V8I|1|2A|C|1052
5V8I|1|2A|C|1053
*
5V8I|1|2A|G|1106
5V8I|1|2A|G|1107
5V8I|1|2A|U|1108
5V8I|1|2A|C|1109
5V8I|1|2A|G|1110
5V8I|1|2A|A|1111
5V8I|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6