IL_5V8I_214

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGGUGG*CCAUCCU

Length

13 nucleotides

Bulged bases

5V8I|1|2A|C|1076, 5V8I|1|2A|U|1078

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2A|A|1057
5V8I|1|2A|G|1058
5V8I|1|2A|G|1059
5V8I|1|2A|U|1060
5V8I|1|2A|G|1062
5V8I|1|2A|G|1063
*
5V8I|1|2A|C|1075
5V8I|1|2A|C|1076
5V8I|1|2A|A|1077
5V8I|1|2A|U|1078
5V8I|1|2A|C|1079
5V8I|1|2A|C|1080
5V8I|1|2A|U|1081

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25