3D structure

PDB id
5V8I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
5V8I|1|2A|A|1938, 5V8I|1|2A|U|1944, 5V8I|1|2A|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5V8I_247 not in the Motif Atlas
Homologous match to IL_7RQB_077
Geometric discrepancy: 0.0798
The information below is about IL_7RQB_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5V8I|1|2A|C|1934
5V8I|1|2A|G|1935
5V8I|1|2A|A|1936
5V8I|1|2A|A|1937
5V8I|1|2A|A|1938
5V8I|1|2A|5MU|1939
5V8I|1|2A|U|1940
5V8I|1|2A|C|1941
5V8I|1|2A|5MC|1942
5V8I|1|2A|U|1943
5V8I|1|2A|U|1944
5V8I|1|2A|G|1945
*
5V8I|1|2A|C|1961
5V8I|1|2A|5MC|1962
5V8I|1|2A|U|1963
5V8I|1|2A|G|1964

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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