IL_5V8I_264
3D structure
- PDB id
- 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V8I_264 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.0995
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
5V8I|1|2A|A|2459
5V8I|1|2A|U|2460
5V8I|1|2A|C|2461
*
5V8I|1|2A|G|2489
5V8I|1|2A|G|2490
5V8I|1|2A|U|2491
5V8I|1|2A|U|2492
5V8I|1|2A|U|2493
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2Q
- 50S ribosomal protein L16
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