IL_5V8I_302

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_302 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1064

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5V8I|1|2a|G|409
5V8I|1|2a|G|410
5V8I|1|2a|A|411
5V8I|1|2a|A|412
5V8I|1|2a|G|413
5V8I|1|2a|A|414
5V8I|1|2a|A|415
5V8I|1|2a|G|416
*
5V8I|1|2a|U|427
5V8I|1|2a|G|428
5V8I|1|2a|U|429
5V8I|1|2a|A|430
5V8I|1|2a|A|431
5V8I|1|2a|A|432
5V8I|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4