IL_5V8I_345

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_345 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.1424

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5V8I|1|2a|C|1440
5V8I|1|2a|G|1441
5V8I|1|2a|G|1442
5V8I|1|2a|G|1442|||A
5V8I|1|2a|A|1442|||B
5V8I|1|2a|G|1443
*
5V8I|1|2a|C|1459
5V8I|1|2a|A|1460
5V8I|1|2a|G|1461

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20