IL_5V8I_365

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUGUGAACC*GGGGAG

Length

15 nucleotides

Bulged bases

5V8I|1|2A|G|2131, 5V8I|1|2A|U|2132, 5V8I|1|2A|A|2134, 5V8I|1|2A|A|2135, 5V8I|1|2A|C|2136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2A|C|2129
5V8I|1|2A|U|2130
5V8I|1|2A|G|2131
5V8I|1|2A|U|2132
5V8I|1|2A|G|2133
5V8I|1|2A|A|2134
5V8I|1|2A|A|2135
5V8I|1|2A|C|2136
5V8I|1|2A|C|2137
*
5V8I|1|2A|G|2154
5V8I|1|2A|G|2155
5V8I|1|2A|G|2156
5V8I|1|2A|G|2157
5V8I|1|2A|A|2158
5V8I|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains