IL_5V93_020

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5V93|1|A|A|893

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_020 not in the Motif Atlas

Homologous match to IL_7RQB_019

Geometric discrepancy: 0.207

The information below is about IL_7RQB_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5V93|1|A|C|826
5V93|1|A|C|827
*
5V93|1|A|G|892
5V93|1|A|A|893
5V93|1|A|G|894

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2