IL_5V93_035

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

5V93|1|A|C|1271, 5V93|1|A|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_035 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.1965

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5V93|1|A|C|1147
5V93|1|A|U|1148
5V93|1|A|A|1149
5V93|1|A|A|1150
5V93|1|A|G|1151
5V93|1|A|U|1152
5V93|1|A|G|1153
*
5V93|1|A|C|1269
5V93|1|A|U|1270
5V93|1|A|C|1271
5V93|1|A|A|1272
5V93|1|A|A|1273
5V93|1|A|G|1274

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13