IL_5V93_056

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_056 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3948

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5V93|1|A|C|1711
5V93|1|A|G|1712
5V93|1|A|G|1713
5V93|1|A|U|1714
5V93|1|A|A|1715
5V93|1|A|G|1716
*
5V93|1|A|U|1752
5V93|1|A|G|1753
5V93|1|A|A|1754
5V93|1|A|G|1755
5V93|1|A|A|1756
5V93|1|A|G|1757

Current chains

Chain A

23S rRNA

Nearby chains