IL_5V93_064

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

5V93|1|A|G|2035, 5V93|1|A|U|2050, 5V93|1|A|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_064 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.1928

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5V93|1|A|U|2032
5V93|1|A|G|2033
5V93|1|A|C|2034
5V93|1|A|G|2035
5V93|1|A|A|2036
5V93|1|A|A|2037
5V93|1|A|G|2038
*
5V93|1|A|C|2047
5V93|1|A|G|2048
5V93|1|A|A|2049
5V93|1|A|U|2050
5V93|1|A|G|2051
5V93|1|A|U|2052
5V93|1|A|A|2053
5V93|1|A|U|2054
5V93|1|A|A|2055

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA