IL_5V93_072

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAAUUCCUUGU*ACCUG

Length

18 nucleotides

Bulged bases

5V93|1|A|A|2176, 5V93|1|A|U|2177, 5V93|1|A|U|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|C|2172
5V93|1|A|G|2173
5V93|1|A|A|2174
5V93|1|A|A|2175
5V93|1|A|A|2176
5V93|1|A|U|2177
5V93|1|A|U|2178
5V93|1|A|C|2179
5V93|1|A|C|2180
5V93|1|A|U|2181
5V93|1|A|U|2182
5V93|1|A|G|2183
5V93|1|A|U|2184
*
5V93|1|A|A|2198
5V93|1|A|C|2199
5V93|1|A|C|2200
5V93|1|A|U|2201
5V93|1|A|G|2202

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)