IL_5V93_079

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCGAA*UUUA

Length

9 nucleotides

Bulged bases

5V93|1|A|C|2440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_079 not in the Motif Atlas

Homologous match to IL_4WF9_085

Geometric discrepancy: 0.2773

The information below is about IL_4WF9_085

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5V93|1|A|U|2439
5V93|1|A|C|2440
5V93|1|A|G|2441
5V93|1|A|A|2442
5V93|1|A|A|2443
*
5V93|1|A|U|2456
5V93|1|A|U|2457
5V93|1|A|U|2458
5V93|1|A|A|2459

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28