IL_5V93_085

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5V93|1|A|U|2729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_085 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.2155

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5V93|1|A|A|2697
5V93|1|A|U|2698
5V93|1|A|C|2699
*
5V93|1|A|G|2727
5V93|1|A|G|2728
5V93|1|A|U|2729
5V93|1|A|U|2730
5V93|1|A|U|2731

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16