IL_5V93_107

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUG*CGACG

Length

9 nucleotides

Bulged bases

5V93|1|a|A|396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_107 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.2622

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5V93|1|a|C|46
5V93|1|a|G|47
5V93|1|a|U|48
5V93|1|a|G|49
*
5V93|1|a|C|394
5V93|1|a|G|395
5V93|1|a|A|396
5V93|1|a|C|397
5V93|1|a|G|398

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16