IL_5V93_134
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAAAUC*GCGUG
- Length
- 12 nucleotides
- Bulged bases
- 5V93|1|a|U|623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V93_134 not in the Motif Atlas
- Geometric match to IL_8C3A_433
- Geometric discrepancy: 0.3048
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
5V93|1|a|U|596
5V93|1|a|G|597
5V93|1|a|A|598
5V93|1|a|A|599
5V93|1|a|A|600
5V93|1|a|U|601
5V93|1|a|C|602
*
5V93|1|a|G|620
5V93|1|a|C|621
5V93|1|a|G|622
5V93|1|a|U|623
5V93|1|a|G|624
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain h
- 30S ribosomal protein S8
- Chain p
- 30S ribosomal protein S16
Coloring options: