IL_5V93_154
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 5V93|1|a|A|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V93_154 not in the Motif Atlas
- Geometric match to IL_3R1C_032
- Geometric discrepancy: 0.2086
- The information below is about IL_3R1C_032
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_08424.1
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 68
Unit IDs
5V93|1|a|C|1050
5V93|1|a|U|1051
5V93|1|a|G|1052
*
5V93|1|a|C|1187
5V93|1|a|A|1188
5V93|1|a|A|1189
5V93|1|a|G|1190
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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