IL_5V93_164

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCCCGUC*GUCGUAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|a|G|1394
5V93|1|a|C|1395
5V93|1|a|C|1396
5V93|1|a|C|1397
5V93|1|a|G|1398
5V93|1|a|U|1399
5V93|1|a|C|1400
*
5V93|1|a|G|1487
5V93|1|a|U|1488
5V93|1|a|C|1489
5V93|1|a|G|1490
5V93|1|a|U|1491
5V93|1|a|A|1492
5V93|1|a|A|1493
5V93|1|a|C|1494

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain b

Capreomycin

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)