IL_5V93_171

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGGC*GAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_171 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.2858

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5V93|1|a|G|1432
5V93|1|a|U|1433
5V93|1|a|G|1434
5V93|1|a|G|1435
5V93|1|a|C|1436
*
5V93|1|a|G|1452
5V93|1|a|A|1453
5V93|1|a|G|1454
5V93|1|a|C|1455

Current chains

Chain a

16S rRNA

Nearby chains

Chain P

50S ribosomal protein L19

Chain t

30S ribosomal protein S20