IL_5V93_197

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUGUGUAGGAUAGGUGGGAG*CGUUGUUGAAAUACCACUCUGA

Length

43 nucleotides

Bulged bases

5V93|1|A|G|2347, 5V93|1|A|U|2348, 5V93|1|A|G|2353, 5V93|1|A|U|2355, 5V93|1|A|G|2361, 5V93|1|A|U|2401, 5V93|1|A|A|2408, 5V93|1|A|A|2410, 5V93|1|A|C|2414, 5V93|1|A|U|2417

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|U|2344
5V93|1|A|U|2345
5V93|1|A|U|2346
5V93|1|A|G|2347
5V93|1|A|U|2348
5V93|1|A|G|2349
5V93|1|A|U|2350
5V93|1|A|A|2351
5V93|1|A|G|2352
5V93|1|A|G|2353
5V93|1|A|A|2354
5V93|1|A|U|2355
5V93|1|A|A|2356
5V93|1|A|G|2357
5V93|1|A|G|2358
5V93|1|A|U|2359
5V93|1|A|G|2360
5V93|1|A|G|2361
5V93|1|A|G|2362
5V93|1|A|A|2363
5V93|1|A|G|2364
*
5V93|1|A|C|2398
5V93|1|A|G|2399
5V93|1|A|U|2400
5V93|1|A|U|2401
5V93|1|A|G|2402
5V93|1|A|U|2403
5V93|1|A|U|2404
5V93|1|A|G|2405
5V93|1|A|A|2406
5V93|1|A|A|2407
5V93|1|A|A|2408
5V93|1|A|U|2409
5V93|1|A|A|2410
5V93|1|A|C|2411
5V93|1|A|C|2412
5V93|1|A|A|2413
5V93|1|A|C|2414
5V93|1|A|U|2415
5V93|1|A|C|2416
5V93|1|A|U|2417
5V93|1|A|G|2418
5V93|1|A|A|2419

Current chains

Chain A

23S rRNA

Nearby chains