IL_5V93_210

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_210 not in the Motif Atlas

Geometric match to IL_8AF0_002

Geometric discrepancy: 0.2346

The information below is about IL_8AF0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5V93|1|a|G|452
5V93|1|a|G|453
5V93|1|a|U|454
*
5V93|1|a|G|468
5V93|1|a|A|469
5V93|1|a|U|470

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16