IL_5V93_212

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAC*GUACA

Length

9 nucleotides

Bulged bases

5V93|1|a|A|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_212 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3899

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5V93|1|a|U|914
5V93|1|a|G|915
5V93|1|a|A|916
5V93|1|a|C|917
*
5V93|1|a|G|1385
5V93|1|a|U|1386
5V93|1|a|A|1387
5V93|1|a|C|1388
5V93|1|a|A|1389

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)