IL_5VI5_005

3D structure

PDB id

5VI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis transcription initiation complex with a full transcription bubble

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GTTAAATTG*CAATTTAAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VI5|1|O|DG|14
5VI5|1|O|DT|15
5VI5|1|O|DT|16
5VI5|1|O|DA|17
5VI5|1|O|DA|18
5VI5|1|O|DA|19
5VI5|1|O|DT|20
5VI5|1|O|DT|21
5VI5|1|O|DG|22
*
5VI5|1|P|DC|28
5VI5|1|P|DA|29
5VI5|1|P|DA|30
5VI5|1|P|DT|31
5VI5|1|P|DT|32
5VI5|1|P|DT|33
5VI5|1|P|DA|34
5VI5|1|P|DA|35
5VI5|1|P|DC|36

Current chains

Chain O

DNA (49-MER)

Chain P

DNA (44-MER)

Nearby chains

Chain D

DNA-directed RNA polymerase subunit beta'

Chain F

RNA polymerase sigma factor SigA

Chain J

RNA polymerase-binding protein RbpA