IL_5VPO_036

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5VPO|1|QA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_036 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.0972

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5VPO|1|QA|G|925
5VPO|1|QA|G|926
5VPO|1|QA|G|927
*
5VPO|1|QA|U|1390
5VPO|1|QA|U|1391

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QX

messenger RNA