IL_5VPO_078

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

5VPO|1|RA|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_078 not in the Motif Atlas

Homologous match to IL_5J7L_262

Geometric discrepancy: 0.0709

The information below is about IL_5J7L_262

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5VPO|1|RA|G|702
5VPO|1|RA|U|703
*
5VPO|1|RA|G|728
5VPO|1|RA|G|729
5VPO|1|RA|C|730

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2