IL_5VPO_089
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPO_089 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.2892
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5VPO|1|RA|G|875
5VPO|1|RA|C|876
5VPO|1|RA|U|877
5VPO|1|RA|A|878
5VPO|1|RA|G|879
*
5VPO|1|RA|C|898
5VPO|1|RA|A|899
5VPO|1|RA|A|900
5VPO|1|RA|A|901
5VPO|1|RA|C|902
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
Coloring options: