IL_5VPO_125

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5VPO|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_125 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1125

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5VPO|1|RA|C|1686
5VPO|1|RA|G|1687
5VPO|1|RA|U|1688
5VPO|1|RA|A|1689
5VPO|1|RA|A|1690
5VPO|1|RA|C|1691
*
5VPO|1|RA|G|1696
5VPO|1|RA|G|1697
5VPO|1|RA|A|1698
5VPO|1|RA|G|1699
5VPO|1|RA|A|1700
5VPO|1|RA|A|1701
5VPO|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2