IL_5VPO_127

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5VPO|1|RA|G|1801, 5VPO|1|RA|G|1816, 5VPO|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_127 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0701

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5VPO|1|RA|U|1798
5VPO|1|RA|G|1799
5VPO|1|RA|C|1800
5VPO|1|RA|G|1801
5VPO|1|RA|A|1802
5VPO|1|RA|A|1803
5VPO|1|RA|C|1804
*
5VPO|1|RA|G|1813
5VPO|1|RA|G|1814
5VPO|1|RA|A|1815
5VPO|1|RA|G|1816
5VPO|1|RA|G|1817
5VPO|1|RA|U|1818
5VPO|1|RA|A|1819
5VPO|1|RA|U|1820
5VPO|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2