IL_5VPO_174

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

5VPO|1|XA|C|48, 5VPO|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_174 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.0871

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5VPO|1|XA|C|47
5VPO|1|XA|C|48
5VPO|1|XA|U|49
5VPO|1|XA|A|50
5VPO|1|XA|A|51
5VPO|1|XA|G|52
*
5VPO|1|XA|U|359
5VPO|1|XA|A|360
5VPO|1|XA|G|361

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12