IL_5VPO_189

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_189 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1163

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5VPO|1|XA|G|409
5VPO|1|XA|G|410
5VPO|1|XA|A|411
5VPO|1|XA|A|412
5VPO|1|XA|G|413
5VPO|1|XA|A|414
5VPO|1|XA|A|415
5VPO|1|XA|G|416
*
5VPO|1|XA|U|427
5VPO|1|XA|G|428
5VPO|1|XA|U|429
5VPO|1|XA|A|430
5VPO|1|XA|A|431
5VPO|1|XA|A|432
5VPO|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4