IL_5VPO_238
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPO_238 not in the Motif Atlas
- Homologous match to IL_7RQB_007
- Geometric discrepancy: 0.0557
- The information below is about IL_7RQB_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5VPO|1|YA|U|239
5VPO|1|YA|G|240
5VPO|1|YA|A|241
5VPO|1|YA|G|242
5VPO|1|YA|U|243
5VPO|1|YA|A|244
5VPO|1|YA|G|245
*
5VPO|1|YA|C|253
5VPO|1|YA|G|254
5VPO|1|YA|A|255
5VPO|1|YA|A|256
5VPO|1|YA|A|257
5VPO|1|YA|G|258
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y8
- 50S ribosomal protein L35
- Chain YP
- 50S ribosomal protein L15
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