IL_5VPO_270
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 5VPO|1|YA|U|1142, 5VPO|1|YA|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPO_270 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.0829
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
5VPO|1|YA|C|1018
5VPO|1|YA|U|1019
5VPO|1|YA|A|1020
5VPO|1|YA|A|1021
5VPO|1|YA|G|1022
5VPO|1|YA|U|1023
5VPO|1|YA|G|1024
*
5VPO|1|YA|C|1140
5VPO|1|YA|U|1141
5VPO|1|YA|U|1142
5VPO|1|YA|A|1142|||A
5VPO|1|YA|A|1143
5VPO|1|YA|G|1144
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YH
- 50S ribosomal protein L6
- Chain YN
- 50S ribosomal protein L13
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