IL_5VPO_295

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_295 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0689

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5VPO|1|YA|G|1651
5VPO|1|YA|A|1652
5VPO|1|YA|G|1653
5VPO|1|YA|A|1654
5VPO|1|YA|A|1655
5VPO|1|YA|C|1656
*
5VPO|1|YA|G|2004
5VPO|1|YA|A|2005
5VPO|1|YA|C|2006

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17