IL_5VPP_015

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_015 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.1571

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5VPP|1|QA|G|371
5VPP|1|QA|C|372
5VPP|1|QA|A|373
5VPP|1|QA|A|374
5VPP|1|QA|U|375
*
5VPP|1|QA|A|389
5VPP|1|QA|C|390

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16