IL_5VPP_018
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_018 not in the Motif Atlas
- Geometric match to IL_4LFB_018
- Geometric discrepancy: 0.1716
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5VPP|1|QA|G|446
5VPP|1|QA|G|447
5VPP|1|QA|A|448
5VPP|1|QA|C|449
5VPP|1|QA|G|450
*
5VPP|1|QA|C|483
5VPP|1|QA|G|484
5VPP|1|QA|G|485
5VPP|1|QA|U|486
5VPP|1|QA|A|487
5VPP|1|QA|C|488
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QD
- 30S ribosomal protein S4
- Chain QP
- 30S ribosomal protein S16
- Chain YI
- 50S ribosomal protein L9
Coloring options: