3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GGACG*CGGUAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_018 not in the Motif Atlas
Geometric match to IL_4LFB_018
Geometric discrepancy: 0.1716
The information below is about IL_4LFB_018
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5VPP|1|QA|G|446
5VPP|1|QA|G|447
5VPP|1|QA|A|448
5VPP|1|QA|C|449
5VPP|1|QA|G|450
*
5VPP|1|QA|C|483
5VPP|1|QA|G|484
5VPP|1|QA|G|485
5VPP|1|QA|U|486
5VPP|1|QA|A|487
5VPP|1|QA|C|488

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QP
30S ribosomal protein S16
Chain YI
50S ribosomal protein L9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.485 s