IL_5VPP_034

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_034 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1847

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5VPP|1|QA|C|834
5VPP|1|QA|U|835
5VPP|1|QA|G|836
*
5VPP|1|QA|U|850
5VPP|1|QA|G|851
5VPP|1|QA|G|852

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QR

30S ribosomal protein S18