IL_5VPP_062

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_062 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.1061

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5VPP|1|RA|G|24
5VPP|1|RA|U|25
5VPP|1|RA|G|26
5VPP|1|RA|G|27
5VPP|1|RA|A|28
5VPP|1|RA|U|29
5VPP|1|RA|G|30
*
5VPP|1|RA|C|510
5VPP|1|RA|U|511
5VPP|1|RA|G|512
5VPP|1|RA|A|513
5VPP|1|RA|A|514
5VPP|1|RA|A|515
5VPP|1|RA|C|516

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RU

50S ribosomal protein L20

Chain RW

50S ribosomal protein L22