IL_5VPP_076

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_076 not in the Motif Atlas

Geometric match to IL_4K31_001

Geometric discrepancy: 0.1571

The information below is about IL_4K31_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5VPP|1|RA|C|564
5VPP|1|RA|C|565
5VPP|1|RA|U|566
*
5VPP|1|RA|A|575
5VPP|1|RA|U|576
5VPP|1|RA|G|577

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3

Chain RP

50S ribosomal protein L15

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21